Malta: Gozo, Comino and Blue Lagoon Cruise with Sea Caves

Thinking about soaking up Malta’s stunning coastlines and charming islands from the water? This 6.5-hour boat tour offers a chance to see Malta’s quieter islands—Gozo and Comino—while enjoying crystal-clear swimming spots, spectacular caves, and picturesque scenery. Whether you’re a nature lover, a history buff, or just in need of a relaxing day on the water, this experience promises a well-rounded glimpse of Malta’s best-kept secrets.

We particularly love the small, family-run vibe, which keeps things intimate and friendly, the chance to snorkel in the Blue Lagoon’s famously clear waters, and the ease of exploring two islands without the hassle of planning separate trips. The itinerary balances sightseeing, relaxation, and cultural moments, making it a practical choice for most visitors.

A possible consideration is that some travelers might wish for more time at each stop—particularly in Victoria or the Blue Lagoon—since the schedule can feel a little packed. But overall, this tour is great for those wanting a comprehensive, hassle-free day on the Maltese waters, especially if you prefer small groups and knowledgeable guides.

This experience is well-suited for families, couples, and solo travelers wanting an authentic taste of Malta’s coastline, with enough flexibility for snorkeling, photo stops, and exploring charming towns.

Key Points

• Authentic Island Visits: Discover Gozo and Comino without the stress of self-planning.
• Scenic Views & Caves: Enjoy picturesque coastlines, Santa Maria caves, and the Elephant’s Head formation.
• Snorkeling & Water Fun: Crystal-clear waters at Blue Lagoon and snorkel gear included (deposit required).
• Flexible & Relaxed: 1.5 hours at Blue Lagoon and a noteworthy visit to Victoria, with free time to explore.
• Family-Friendly: Suitable for all ages, with comfortable amenities like showers, toilets, and sundecks.
• Value for Money: Combines sightseeing, swimming, and cultural exploration in one affordable package.

You can check availability for your dates here:

Exploring the Itinerary in Detail

This tour kicks off in Sirens Quay in St. Paul’s Bay around 10:30 AM, with boarding closing at 10:00 AM. From here, the vessel—called Seahorse Cruises—sets sail along Malta’s rugged coastline, passing notable sights like St. Paul’s Island, Mellieha Bay, and Smuggler’s Cove Cave. These vantage points give you a first glimpse of Malta from the water, setting the tone for a day packed with scenic beauty. The small size of the boat keeps the experience intimate, a refreshing change from overcrowded tourist boats.

The Cruise and First Stop: Gozo

The highlight of the cruise is a visit to Gozo, Malta’s quieter, more rural neighbor. Once on the island, you’ll be greeted by guides and taken to Victoria, the charming capital. Here, you’ll have around two hours to wander, take photos, and browse the local market—perfect for grabbing souvenirs like fridge magnets and handmade crafts. Reviewers like Cheryl appreciated the family-run business and the welcoming atmosphere, noting the small boat kept the experience cozy and peaceful, avoiding the crowds typical of larger operators.

Blue Lagoon & Snorkeling

Later in the afternoon, the tour heads to Comino, known for the famous Blue Lagoon. This spot is often the main draw—crystal-clear waters make it one of the most photographed places in Malta. You’ll have about 1.5 hours here to swim, snorkel, or simply relax on the boat. Snorkel gear is provided, with a small deposit required, and reviewers have been quick to recommend the optional speedboat ride to add even more fun.

Scenic Caves & Final Stops

On the return journey, you’ll pass by Santa Maria Caves, a lovely photo opportunity with dramatic rock formations, including the Elephants Head. The guides’ commentary helps you understand the geological features and adds to the enjoyment of the sightseeing. The boat also stops briefly for photos of Crystal Lagoon and scenic views en route back to Sirens Quay, arriving around 5:00 PM.

More Great Tours Nearby

Practical Details and what you need to know

The tour is designed for all ages and includes essentials like toilets, showers, and a sundeck for relaxing between stops. The live commentary in English and Italian adds educational value and helps you understand the significance of each location.

Pricing offers good value—covering transportation, guided commentary, snorkeling gear, and entry to notable spots like Victoria and the Blue Lagoon. Food and drinks are available for purchase onboard, but lunch isn’t included, so plan accordingly if you’re hungry.

One notable change coming in May 2025 is the introduction of free QR codes required to access the Blue Lagoon, so you’ll want to book your slot at www.blcomino.com for that. If you prefer to stay on the boat at Blue Lagoon, no QR code is needed.

What Travelers Say

From genuine reviews, we learned that the small boat creates a more personalized experience—not overcrowded—and makes it easier to relax and enjoy the scenery. Many appreciated the well-organized schedule and friendly guides, with Cheryl mentioning how the crew was very welcoming.

Mary’s review highlighted how the tour showed beautiful sights and recommended the optional speedboat ride for extra fun. She also wished for more time in Victoria and the Blue Lagoon, but ultimately felt the experience showcased “how much there is to see.” Another traveler appreciated the opportunity to see the islands and caves in a way that felt comfortable and scenic.

Final Thoughts: Who Is This Tour For?

This boat trip offers a balanced mix of sightseeing, relaxation, and cultural exploration, making it ideal for travelers who want a comprehensive day trip without the hassle of organizing multiple transfers. It’s especially suited for those who enjoy small group experiences, want to snorkel in famous spots, or simply want a scenic cruise with plenty of photo opportunities.

If you’re looking for a value-packed, easy-to-join adventure that takes you beyond Malta’s main island, this tour hits all those marks. Family groups will find it accommodating, and the moderate duration is perfect for a day out without feeling rushed.

FAQ

What time does the tour start?
It begins at 10:30 AM from Sirens Quay in St. Paul’s Bay, with boarding closing at 10:00 AM. Check the availability for specific start times.

Is lunch included?
No, lunch isn’t included, but food and drinks are available for purchase onboard, so you can grab a snack or meal during the trip.

Are snorkeling masks provided?
Yes, snorkeling masks are included, but a small deposit is required—about €10—so bring some cash just in case.

How long is the stop at Blue Lagoon?
You’ll have around 1.5 hours here for swimming, snorkeling, or relaxing on the boat.

Can I stay on the boat during the Blue Lagoon stop?
Yes, you can stay onboard if you prefer not to swim or snorkel. No QR code is needed if you choose to remain on the boat.

Is this tour suitable for children?
Absolutely, the tour is suitable for all ages, though parents should supervise children during swimming and snorkeling.

What should I bring?
Comfortable shoes, sun hat, towel, sunscreen, beachwear, and some cash for extras or souvenirs.

Will the itinerary change?
The captain and provider reserve the right to cancel or alter the route, depending on weather or tides, but the main stops are generally consistent.

Final Words

This boat tour to Gozo, Comino, and the Blue Lagoon offers a well-rounded experience that balances scenic cruising, cultural highlights, and water-based fun. Its intimate setting, knowledgeable guides, and thoughtful itinerary make it a compelling choice for anyone wanting a laid-back but enriching day in Malta. Whether you’re soaking in the sun at Blue Lagoon, exploring the charming streets of Victoria, or marveling at the caves and rock formations, you’re set for a memorable day on Malta’s waters.

Perfect for first-timers and seasoned travelers alike, this tour gives you a taste of Malta’s stunning coastlines with ease and authenticity. Pack your swimsuit and sense of adventure—you’re in for a fantastic ride.

You can check availability for your dates here: