St Paul’s Bay is a fantastic starting point for exploring Malta’s waters. Unlike many seaside spots, it offers a lively yet relaxed atmosphere where boat tours range from quick trips to full-day adventures. What we love most are the Blue Lagoon cruises—they combine crystal-clear swimming spots with spectacular scenery. Whether you prefer a shared group experience or a private charter, there’s something here to suit every type of traveler. For a laid-back day with plenty of swimming and caves to explore, the Comino, Blue Lagoon, Gozo, & Caves Boat Tour is especially popular. Its 4.5-star rating from over 1,300 reviews speaks to its value, and for good reason.
If you’re looking for exclusivity and personalized service, a Private Boat Cruise with Caves, Beaches & Swim Stops offers a customizable day on the water. Want to tour islands at your own pace? The Gozo, Comino Island, and Blue Lagoon Cruise provides a longer, more relaxed experience, perfect for those who want to see more than just the main tourist spots. For those who favor a sunset experience, the Late afternoon cruise to the Blue Lagoon and seacaves is ideal—less crowded, cooler temperatures, and stunning views as the sun dips.
Finally, families and groups wanting a tailored experience might prefer the Full Day Comino, Blue Lagoon, Charter Cruise, which offers ample time to explore at your leisure or the Private Boat to Comino & North Coast for a truly exclusive outing. Read on for detailed descriptions of each, helping you pick the perfect adventure.
1. St Paul’s Bay: Comino, Blue Lagoon, Gozo, & Caves Boat Tour
At number one, this 5.5-hour boat tour is a balanced mix of sightseeing, swimming, and exploring. Departing from Bugibba Jetty, you’ll cruise through the Mediterranean to visit Comino and Gozo, with the highlight being the Blue Lagoon. This tour stands out because of its comprehensive itinerary—covering stunning caves like Santa Maria and Elephant Rock, with plenty of time to swim and snorkel in some of Malta’s clearest waters.
The itinerary is packed but well-paced, with a total of about 5.5 hours that balance scenic cruising and stops for relaxing in the waters or walking along beautiful coastlines. Many reviews mention how the Blue Lagoon’s swimming and snorkeling are the main highlights, with travelers also appreciating the scenic pass-bys of natural cave formations. The price is very reasonable at around $24 per person, making it an excellent value for a tour that covers multiple islands and fantastic viewpoints.
This tour is well-suited for travelers who want a full taste of Malta’s waters, without the hassle of planning transport or multiple bookings. The friendly crew and organized schedule mean you can relax and enjoy the scenery.
Bottom Line: A fantastic, all-in-one cruise for those wanting a balance of sightseeing, swimming, and exploring caves, all at a budget-friendly price.
2. Malta: Private Boat Cruise with Caves, Beaches & Swim Stops
Number two on our list offers the ultimate in flexibility and comfort. This private boat cruise lets you customize the route to suit your preferences, whether that’s seeking out secluded beaches or exploring specific caves. Departing from Sea Life Cruises, you’ll have a dedicated guide and crew, making for a personalized experience.
What makes this tour stand out is the freedom it offers. You can spend as much time as you like in favorite spots, hop in for multiple swims, or just lounge on the deck soaking up the sun. Many reviews emphasize how the crew, especially captain Francis, is accommodating and attentive to guest needs. They often mention the delicious Maltese platter enjoyed onboard, adding a touch of local flavor to the day.
This cruise typically lasts around 4 hours, giving you ample time to explore Malta’s coastlines and islands without feeling rushed. It’s perfect for families, couples, or groups wanting a more intimate experience. The main drawback might be the higher price compared to shared tours, but for many, the exclusivity and flexibility justify the cost.
Bottom Line: An ideal choice for travelers seeking a tailored, private experience with the comfort of a dedicated crew and flexible itinerary.
3. Malta: Gozo, Comino Island and Blue Lagoon Cruise
For those wanting the longer, more immersive experience, this 6.5-hour cruise offers a well-rounded way to see Malta’s quieter islands. Starting from Sirens Quay, it hits key spots like Gozo’s Victoria, with about two hours of free time to explore independently, plus swimming and snorkeling at the Blue Lagoon.
What makes this tour unique is the opportunity to explore Gozo’s charming towns and natural beauty alongside the scenic caves around Comino. The onboard diving platform is a nice touch for snorkelers, and the natural caves around Comino are perfect for those keen on exploring sea formations. Reviewers love the mix of crystal-clear waters and scenic cruising, with many describing the experience as both relaxing and visually stunning.
Value-wise, this trip is very good considering it includes time for sightseeing, swimming, and exploring two islands. It’s best suited for travelers who want to see more than just the main attractions and are comfortable with a longer day on the water.
Bottom Line: An excellent choice for those wanting to combine island exploration with ample swimming time in a full-day format.
4. Late afternoon cruise to the Blue Lagoon and seacaves
If you’re after a quieter experience and a stunning sunset, the Late afternoon cruise is perfect. Departing from Sirens Quay, it takes you to the Blue Lagoon just as the day cools off and the crowds thin.
This 4-hour cruise offers a relaxed pace, with plenty of time to swim and snorkel in the lagoon’s calm, clear waters. The itinerary includes scenic passes by caves like Santa Maria, with an emphasis on enjoying the sunset views. Many reviewers mention how peaceful and beautiful the experience is, especially compared to the busy daytime trips.
The best part? You avoid the heat and crowds of peak hours, making for a more intimate and serene experience. It’s suited for travelers who love sunset views, soft lighting, and a tranquil atmosphere.
Bottom Line: Perfect for those who want a peaceful, scenic evening swim with fewer crowds and spectacular sunset views.
5. Malta: Gozo, Comino and Blue Lagoon Cruise with Sea Caves
This exclusive 6.5-hour full-day tour offers a balanced mix of sightseeing and swimming. Starting from Sirens Quay, it explores both Gozo and Comino, giving a comprehensive look at Malta’s surrounding islands.
What makes it stand out is the opportunity to swim and snorkel in the famous Blue Lagoon, while also visiting Gozitan landmarks. The itinerary includes scenic passages around caves and coastlines, with many reviews praising the quiet, uncrowded boat that allows for a more relaxed day. It’s especially suitable for families or those who want to see more than just the beaches.
The tour includes stops for self-guided exploration in Gozo, which adds a cultural touch, alongside plenty of time to enjoy the waters. The boat’s friendly crew and focus on comfort make it a great value for a full day of discovery.
Bottom Line: Best for travelers seeking a well-rounded, full-day experience with time to explore both islands and enjoy quiet swimming spots.
6. FULL DAY – 7hours Comino, Blue Lagoon, charter, boat, cruise
The full-day cruise delivers a comprehensive experience, ideal for those wanting maximum time on the water. Departing from Malta, it covers hidden coastline gems and offers ample opportunities to swim and snorkel at Crystal Lagoon.
This tour is especially suited for travelers who want a more relaxed pace, with enough time to explore, sunbathe, or snorkel at different lagoons. The itinerary emphasizes panoramic views of Malta’s archipelago, with the flexibility to discover less crowded spots. The value here is in the extended duration, allowing a full day’s worth of exploration and relaxation.
While the price is not specified, the length and scope suggest a good value for those who want a deep, leisurely day on the water. It’s perfect for families or groups looking for a comprehensive, unhurried experience.
Bottom Line: Excellent for travelers who want a full day of exploration, swimming, and scenic cruising at a relaxed pace.
7. Malta: St. Paul’s Bay – Private Boat to Comino & North Coast
Finally, the Private Boat to Comino & North Coast offers a tailored experience. Departing from St Paul’s Bay, this 4-hour private tour takes you to the Blue Lagoon, Elephant Rock, and Santa Maria Caves in a completely customizable way.
The advantage is the personalized itinerary—you decide which caves or beaches to visit, and your crew adapts accordingly. Reviews highlight the comfort and exclusivity of the private boat, with many mentioning the stunning views of Malta’s coast and the ability to swim in crystal-clear waters. The tour also includes cruising beneath historic fortresses, which adds a touch of history to your trip.
This is suited for travelers wanting privacy, a flexible schedule, or celebrating special occasions like honeymoons or family gatherings. The main consideration is cost, but for those seeking a unique, intimate experience, it’s worth it.
Bottom Line: Best for travelers seeking an exclusive, customizable experience on Malta’s waters with the comfort of a private boat.
How to Choose Your Perfect Malta Boat Tour
When picking your ideal cruise, consider your budget, schedule, and what you most want from the experience. If you’re on a tight budget, the Comino, Blue Lagoon, Gozo, & Caves Boat Tour offers great value. For a more personalized day, the Private Boat Cruise is ideal, especially if you want to avoid crowds.
Longer trips like the Gozo, Comino, and Blue Lagoon Cruise are perfect for those eager to see more and spend time exploring. If you love sunsets and peaceful evenings, opt for the Late afternoon cruise. Families or groups that want a flexible schedule should consider the full-day cruise or private charter.
Booking early is recommended, especially for private options and summer weekends when tours fill quickly. Think about what’s most important: budget, privacy, time, or the chance to explore specific spots like Elephant Rock or the Santa Maria Caves.
To sum it up, whether you want a budget-friendly group tour full of swimming and caves, or a private, tailored day on the water, St Paul’s Bay offers plenty of options. The comprehensive full-day tours and luxury private charters stand out as top picks for different travelers. Whatever your choice, booking early will ensure you don’t miss out on these memorable Malta water adventures.