Mellieha, on Malta’s north coast, offers a fantastic launchpad for exploring the surrounding waters. Its access to Comino and Gozo makes boat trips a natural choice for travelers eager to see Malta from the sea. What makes Mellieha stand out is its convenient location—close enough to major attractions but still offering small-group, personalized experiences. We particularly love tours like the Comino & Gozo: Blue & Crystal Lagoons Cruise with Sea Caves, thanks to its intimate size and emphasis on snorkeling and exploring caves. Whether you’re after a quick half-day or a sunset view with prosecco, Mellieha provides options for every taste. Plus, these tours often include stops at iconic sites like the Elephant Rock or Santa Maria Bay, ensuring a memorable day on the water.
Below, you’ll find a selection of the best cruises and boat tours in Mellieha, each with its own character—from full-day adventures to romantic sunset trips. We’ve sorted these by their unique features, reviews, and suitability for different travelers, helping you find the right match.
1. Comino & Gozo: Blue & Crystal Lagoons Cruise with Sea Caves
At number one, this half-day cruise combines visits to the stunning Blue Lagoon and Crystal Lagoon with explorations of captivating sea caves. The tour is limited to just 25 passengers, making it much more personal than the big party boats. The small size allows for frequent stops for swimming and snorkeling in crystal-clear waters, plus the chance to explore enchanting caves and dramatic rock formations. The itinerary includes scenic drives past Mgarr Harbour and San Niklaw Bay, with plenty of photo stops. Reviewers love the friendly crew and the intimate atmosphere, with comments like “less crowded, more personal,” and “amazing cave tour.” The tour’s emphasis on quality snorkeling and cave exploration makes it ideal for travelers wanting a balance of adventure and relaxation without feeling lost in a crowd.
Bottom line: Perfect for small groups, snorkelers, and lovers of caves.
2. Mellieha: Gozo, Comino, Sea Caves, and Blue Lagoon Cruise
Second on the list, this 4-hour tour offers a comprehensive look at Gozitan and Comino highlights. Starting at Cirkewwa, it takes you past the Santa Maria Caves and into the Crystal and Blue Lagoons for swimming and snorkeling, with around 50-minute stops at each lagoon. The itinerary also includes a scenic cruise along the coast and visits to Gozitan beaches. Many reviews praise the friendly staff and the balance of time spent swimming, sightseeing, and relaxing. It’s a great choice for those who want a well-rounded experience of Malta’s most famous spots without the full-day commitment. This tour is particularly good for travelers who prefer a flexible schedule and want to maximize swim time.
Bottom line: Ideal for travelers seeking an all-around day of lagoon swimming and coastal scenery.
3. Comino Blue Lagoon & Crystal Lagoon – 3 Bay Cruise
This 6-hour tour is a longer, more relaxed option with capacity for about 45 people, making it more comfortable than larger boats. The cruise visits three bays—the Crystal Lagoon, Blue Lagoon, and Gebla Tal Halfa—with plenty of time for swimming, snorkeling, and relaxing. The boat departs facing Comino Island, with a focus on enjoying 4 hours of swimming across different locations. The reviews highlight the breathtaking scenery and friendly crew. The longer duration means you can explore more at each stop, making it suited for travelers who want a deeper experience of Malta’s waters.
Bottom line: Perfect for those wanting a leisurely, multi-spot exploration with ample swim time.
4. Comino: Blue Lagoon, Crystal Lagoon, Sea Caves Boat Tour
Number four offers a scenic 3-4 hour tour to Comino’s biggest highlights. This boat, with a capacity of just 24, provides an intimate experience. Visitors will enjoy stops at Blue Lagoon, Crystal Lagoon, and the Santa Maria Caves, with options for snorkeling, marine viewing, and scenic cruising. The tour includes visits to Elephant Rock and other iconic formations, with plenty of time for snorkeling and relaxing on the beaches of Santa Maria Bay. The reviews mention the peacefulness of the small boat and the stunning scenery. It’s ideal if you prefer a quiet and less crowded adventure.
Bottom line: Best suited for travelers who value intimacy and personalized attention.
5. Mellieha: Round Comino, Blue Lagoon & Gozo Cruise with Water
This 4-hour cruise offers a fun mix of swimming, snorkeling, and scenic cruising. The highlight is the water slide—a hit with families—and the chance to explore the Blue Lagoon and Crystal Lagoon. It includes complimentary mineral water and passes by Gozo on the return journey. The reviews praise the value for money and the active, fun atmosphere, making it perfect for families or travelers wanting more than just a sightseeing trip. The tour balances adventure and relaxation with short stops and a lively vibe.
Bottom line: Great for families and those looking for a lively, active day.
6. From Mellieha Bay: Blue Lagoon Sunset Cruise
For a romantic twist, this sunset cruise departs at 4:30 PM, heading to the Blue Lagoon for 1.5 hours of swimming and snorkeling. The highlight is the sunset view over Comino, complemented by complimentary prosecco and relaxing music. It’s a short, intimate experience designed to avoid daytime crowds and enjoy Malta’s coast in a tranquil, romantic setting. The single review praises it as an excellent sunset experience. It’s best suited for couples or anyone wanting a peaceful, picturesque evening on the water.
Bottom line: Perfect for romance and sunset lovers seeking a serene end to the day.
7. Comino: Mystic Caves, Blue and Crystal Lagoon Boat Cruise
This very high-rated, 1-hour private boat tour is perfect for small groups or couples seeking a personalized experience. The skipper takes you around Comino’s key caves and Lagoon spots like Blue and Crystal Lagoon, with opportunities for snorkeling. Highlights include visits to Cominotto Island and the Lovers Cave. The reviews mention the calm, cosy ambiance and the friendly skipper. Its shorter duration makes it ideal for travelers with limited time or those who want a tailored, intimate cruise.
Bottom line: Best for those wanting a private, flexible experience with personalized guiding.
8. Comino Splash & Dash: Private Blue/Crystal Lagoon Boat Tour
Number eight is a 2-hour private tour focusing on secluded beaches and caves. It starts with pickup options from Ghajnsielem or Ċirkewwa, then takes you to Crystal Lagoon, Blue Lagoon, and Cominotto. The tour emphasizes skip-the-line access and customized stops, including snorkeling and marine viewing. The reviews call it a “very nice outing” with a personalized touch. Perfect if you want a flexible, private adventure with plenty of swimming and exploration.
Bottom line: Ideal for private groups or couples seeking a tailored experience.
9. Malta, Comino, Blue Lagoon & Crystal Lagoon: 4-hour Cruise
This 4-hour cruise offers a straightforward trip to multiple popular sites like Santa Maria Caves and Blue and Crystal Lagoons. Starting at Cirkewwa, it includes swimming, snorkeling, and scenic cruising with multiple photo stops. Reviewers appreciate the solid value and well-organized itinerary. It’s a good choice if you prefer a classic, no-frills day at sea that hits all the highlights.
Bottom line: Suitable for travelers wanting a traditional, comprehensive cruise experience.
10. Malta: North Coast, Blue Lagoon and Comino Boat Tour
With only one review but a high rating, this 5-hour tour explores North Malta’s coast, including Blue Lagoon and St. Paul’s Island. It emphasizes small-group swimming stops with music and drinks, perfect for a relaxed afternoon. It’s great if you want a less commercial experience but still see the top spots.
Bottom line: Best suited for small groups wanting a relaxed, social trip.
11. Comino and Blue Lagoon Private Boat
This personalized private tour is flexible, with durations from 1 to 3 hours. It offers customized itineraries around Comino’s bays, caves, and quiet beaches. The review notes its personalized approach and engaging skipper. Ideal if you’re seeking a tailored, quiet escape with the flexibility to choose your spots.
Bottom line: Best for private groups or couples wanting a customized day on the water.
12. Mellieha: Cruise to Blue Lagoon, Crystal Lagoon & Halfa Rock
This 3.5-hour cruise from Mellieha covers key highlights like Halfa Rock and Elephant Head Rock, with swimming and snorkeling stops in the Blue and Crystal Lagoons. Reviewers appreciate the excellent value and the beautiful scenery, especially the caves and famous Elephant Head. It’s suited for those who want a shorter, scenic trip with plenty of swimming.
Bottom line: Perfect for travelers who want a quick but scenic water journey.
13. Comino Cruise: Crystal Lagoon, Blue Lagoon, Santa Marija Bay
Closing the list, this 4-hour cruise offers a comprehensive visit to three key bays. The itinerary includes swimming, snorkeling, and capturing scenic views at Santa Marija Bay and Sea Caves. The reviews mention stunning waters and good value for the trip. It’s an excellent choice for travelers wanting to see everything in a single day—without rushing.
Bottom line: Good for those who want a complete overview of Comino’s most famous spots.
How to Choose the Best Boat Tour in Mellieha
Choosing among these options depends on what you’re after. If small-group intimacy and cave exploration appeal, consider the Comino & Gozo: Blue & Crystal Lagoons Cruise with Sea Caves. For a romantic sunset experience, the Blue Lagoon Sunset Cruise is ideal. Families or those seeking active fun will enjoy the Mellieha: Round Comino, Blue Lagoon & Gozo Cruise with Water. For a private, personalized adventure, the private tours like Comino and Blue Lagoon private boat offer flexibility and comfort.
When choosing, consider your budget, time available, and whether you prefer a full day of exploration or a shorter, more relaxed trip. Booking early during peak seasons is wise, as the most popular tours tend to fill up fast. Also, think about your interest in snorkeling, caves, or scenic photography—some tours focus more on underwater fun, others on scenic cruising.
Final thoughts
Mellieha offers a wide variety of cruise experiences that cater to different tastes. For a comprehensive experience of Malta’s coastlines, the longer 3-4 hour tours provide good value. If you prefer something more intimate or private, the smaller boats and private tours excel. For those looking for a romantic sunset, the evening cruise to Blue Lagoon is unbeatable.
No matter which tour you pick, these trips deliver stunning views, refreshing swims, and a chance to see Malta’s waters from a different perspective. Book early, pack your swimwear, and you’re all set for a memorable day on the water.