Malta’s 10 Best Cruises And Boat Tours: Which To Choose?

Malta is a small but mighty island nation with crystal-clear waters, rugged coastlines, and a warm Mediterranean breeze. It’s a perfect setting for cruise and boat experiences that give you a fresh perspective away from crowded streets and historical sites. Whether you want a relaxing sunset or an adventurous private charter, Malta’s waters offer something for every traveler. We particularly like the Blue Lagoon Sunset Cruise, for its relaxing vibe and unbeatable sunset views, and the Private Boat Tour for personalized exploration.

From full-day island hopping to short sunset trips, Malta’s boat tours combine scenic beauty with practical convenience. Many tours include snorkeling, swimming, and stops at famous spots like Comino’s Blue Lagoon and Gozo’s rocky coastlines. You’ll see the islands from angles that are impossible on land, often with the option of customizing your day.

Quick Overview

Malta offers a broad range of boat tours and cruises that suit different interests and budgets. You can choose from group day trips, private yacht charters, sunset cruises, or themed experiences like Turkish Gullet sails. Many tours include stops at famous swimming spots like the Blue Lagoon, guided island visits, and all-inclusive options. Next, we explore each of the top options in detail.

1. Blue Lagoon SUNSET Cruise

This is the perfect escape from the bustling mainland to enjoy Malta’s stunning waters at sunset. The Blue Lagoon Sunset Cruise lasts around four hours and costs about $35 per person, making it a very reasonable way to soak in some of the island’s best scenery. The trip begins on a comfortable boat heading toward Comino, arriving just in time to watch the sun dip behind the cliffs. It’s a relaxing alternative to crowded viewpoints and offers great photo opportunities of the west coast sunset.

On board, you can relax, enjoy a drink, or have some fun on the water slide. Snorkeling and swimming are popular activities during the stop at the Blue Lagoon—though it’s best to bring your own towel and gear if you want to make the most of it. Food and drinks are available for purchase, adding to the laid-back vibe. The reviews highlight the friendly staff, beautiful scenery, and surprisingly good quality food, especially given the budget-friendly price. It’s well suited for families, couples, or anyone wanting a chill evening on the water with stunning views.

Bottom Line: An excellent value for a sunset experience with plenty of photo opportunities, water fun, and relaxing atmosphere. Perfect if you want to avoid daytime crowds and enjoy Malta’s coast at dusk.

2. Private Boat Tour to Blue Lagoon Comino Caves and Gozo

At number 2, this private boat tour offers an exclusive and tailored experience. Starting around $229 for up to 8 people, the 2-hour trip takes you to hidden caves, serene lagoons, and historic landmarks like the 1618 watchtower. You can choose your stops—whether that’s snorkeling in Crystal Lagoon, relaxing at Cominotto, or simply enjoying the breathtaking scenery from the boat.

What makes this tour stand out is the personalized approach. The guide customizes stops based on your preferences, making it ideal for a romantic getaway, special celebration, or a small group of friends. Guests love the ample swimming time and the friendly, informative guide who shares local insights. Many reviews mention how this trip offers a more private and relaxed atmosphere compared to larger groups.

This tour is perfect for travelers who want flexibility, enjoy water activities, and prefer a more intimate experience. Keep in mind, it’s a bit pricier, but the exclusivity, comfort, and customization are well worth it if you’re seeking a special day at sea.

Bottom Line: Best suited for couples or small groups wanting a personalized, flexible adventure** on Malta’s waters, with the option to include snorkeling and explore lesser-known spots.

3. Gozo, Comino and Blue lagoon Cruise

If you’re after a full-day adventure, this 7.5-hour cruise hits the spot by combining sightseeing, swimming, and land visits. Departing from Sliema, the tour takes you to both islands of Gozo and Comino—a trip that’s highly valued by travelers who want to maximize their time. The boat stops at Xlendi Bay, the Citadel in Victoria, and the Blue Lagoon, with optional guided land tours and plenty of swimming opportunities.

The guided bus tour of Gozo includes stops at landmarks like Fungus Rock and the Inland Sea, offering insights into the island’s history and culture. The Blue Lagoon stop is the highlight, with 90 minutes (April–October) to swim and relax. The reviews note that while the trip is a bit rushed for some, it offers good value, especially for first-time visitors eager to see both islands in a day.

This tour appeals to those wanting comprehensive exploration—combining sea and land experiences—with the convenience of a scheduled guided tour. The only downside is that some travelers find the time at each stop slightly limited.

Bottom Line: An ideal choice for travelers with limited time who want to see both Gozitan and Comino highlights in one go, blending sightseeing with leisure.

4. Malta: The Three Islands Private Boat Tour

For a more luxurious and personalized experience, this full-day private boat cruise offers up to 8 people the chance to explore Malta, Gozo, and Comino at your own pace. The boat features sound system, shade, and snorkeling gear. Starting from Beachaven, the itinerary is flexible, allowing you to visit L-Aħrax, Mgarr Harbour, and various swimming spots including the Blue Lagoon.

The real advantage here is the customization—you decide where to go, how long to stay, and what activities to do. Many reviews praise the friendly captain, beautiful boat, and the ability to tailor the trip to their preferences. It’s well suited for families, groups of friends, or couples celebrating a special occasion. The cost reflects the exclusivity and luxury, but many find it worth every penny for the privacy and flexibility.

This tour is best if you want a private, no-hurry day with all the gear, the boat, and a knowledgeable captain at your disposal. It’s a bit more expensive but offers an unmatched personalized experience.

Bottom Line: Perfect for travelers seeking luxury, flexibility, and the ability to customize their day on Malta’s waters with a private crew.

5. The Gozo in a Day Jeep Tour w/ Private Boat ride to Gozo & return

This tour combines land and sea to give a comprehensive view of Gozo in a single day. Starting with private boat transfers (weather permitting), the tour includes visits to Ggantija Temples, the Citadel, and Dwejra Bay. A jeep ride lets you explore Gozo’s countryside, beaches, and towns, with optional stops at Ramla Bay and Xwejni Salt Pans.

Guests appreciate the well-organized itinerary and friendly guide who shares local insights. The reviews mention that while it’s not the most luxurious trip, it offers great value and ample flexibility. Lunch is included at no extra cost, which adds to the convenience.

This tour is best suited for those who want a mix of cultural sights, scenic drives, and beach time in one day. It’s not as private as the full yacht charter but still offers a personalized touch with the jeep tour and optional stops.

Bottom Line: A good pick for travelers who want to cover major Gozitan highlights with some flexibility and enjoy both land and sea explorations.

6. Private Yacht Charter in Malta, Gozo & Comino – Full Day

If you’re craving the ultimate luxury experience, this private 8-hour yacht charter lets you design your perfect day on the water. The 41-foot cabin cruiser is fully equipped, and the captain handles all logistics. You can swim at Blue Lagoon, Crystal Lagoon, Santa Maria Bay, or explore caves, all at your pace.

Guests love the ease of planning, with the ability to bring your own lunch or visit a restaurant. The boat is suitable for small groups up to 8 and features water sports gear, including paddleboards on request. Many reviews highlight how personalized and relaxing the day is, with the captain’s attention to detail.

This option is ideal for travelers who want total control over their itinerary and the comfort of a luxury private boat. It’s more expensive but provides unmatched flexibility and privacy.

Bottom Line: The best choice for those wanting a custom, high-end experience—perfect for special occasions or a memorable family day on the sea.

7. Turkish Gullet Cruise to Gozo and Comino with Lunch and Transfers

This 7.5-hour cruise on a traditional Turkish Gullet offers a romantic and scenic way to see Malta’s coastlines. The boat features dining, swimming, and sightseeing. A buffet lunch is included, making it a relaxing, all-in-one experience. Departure from Sliema means easy access for most travelers.

The cruise includes stops at Blue Lagoon and Comino Caves (weather permitting), and the all-inclusive drinks—wine, beer, and soda—add to the party atmosphere. The reviews note the beautiful setting and the friendly crew who make sure everyone is comfortable and well-fed.

This tour suits travelers who want a lively, social atmosphere with the chance to meet other travelers while enjoying Malta’s scenic coast. It’s not as customizable as private options but offers a romantic and festive vibe.

Bottom Line: Best suited for groups wanting a relaxed, inclusive cruise experience with good food and drinks on a traditional gullet.

8. Magic of Malta: A Cruise Passenger’s Dream Day

Designed with cruise passengers in mind, this 4-hour guided tour takes you from Valletta port to explore Mdina, St. Julian’s, and other highlights. The comfortable coach and timely schedule help you see Malta’s key sights without the stress of planning.

The tour focuses on highlighting Malta’s history and architecture, with a relaxed pace and friendly guides. Reviews praise the smooth logistics and deep local knowledge, making it an ideal way to maximize a short visit.

This experience is suited for first-time visitors with limited time who want a guided overview. It emphasizes convenience and insight rather than water activities.

Bottom Line: An excellent way for cruise passengers to get a taste of Malta’s key sights with minimal hassle and expert guiding.

9. Comino Blue Lagoon Prime Catamaran Tour with All Inclusive

For those seeking a luxurious day at sea, this 7-hour catamaran tour offers top-notch comfort, food, and drinks. The tour includes multiple stops for swimming in popular bays, with a highlight at the Blue Lagoon. The all-inclusive package includes buffet lunch, wine, beer, and soft drinks, making it ideal for a carefree day.

Guests love the modern, spacious catamaran and the professional crew, who keep the atmosphere lively yet relaxing. The reviews mention the quality of the food and the plenty of swimming opportunities—a perfect choice for couples or groups wanting a comfortable, upscale experience.

This tour is best for travelers wanting a premium experience with all the comforts included. It’s a bit pricier but delivers value through comfort and convenience.

Bottom Line: Ideal for anyone looking to combine luxury with scenic cruising and a fully inclusive day on Malta’s waters.

10. Buggy Boat Rentals

For a more active and adventurous water experience, the Buggy Boat Rentals are a great pick. In just one hour, you can explore caves, admire cliffs, and enjoy the sea at your own pace. This is less of a tour and more of individual exploration on a fun, modern buggy boat.

While reviews are mixed, many appreciate the stunning scenery and the chance to try something different. It’s best suited for families or groups who want a short, energetic outing with a bit of scenic exploration.

Practical for those on a tight schedule or looking for a light-hearted adventure, it’s a flexible way to see Malta’s coastlines without a structured tour.

Bottom Line: Great for adventurers and families who want a quick, fun ride and to explore caves and cliffs on their own terms.

How to Choose the Right Malta Water Tour

When deciding among these options, think about your budget, time, and interests. If a relaxing sunset appeals, the Blue Lagoon Sunset Cruise is perfect. For a personalized, exclusive experience, look at the Private Boat Tour. If you’re short on time but want to see both islands, the full-day cruise offers a comprehensive experience. For luxury and privacy, the private yacht or catamaran tour make excellent choices.

Consider your fitness level if you want to snorkel or swim, and check if the tour includes meals or drinks if you prefer an all-inclusive day. Booking early is recommended during high season, especially for private and luxury options.

Final Thoughts

Malta’s diverse boat tours and cruises mean there’s something for all—from budget-friendly sunset sails to private charters with all the bells and whistles. For a romantic evening, the Blue Lagoon Sunset Cruise excels, while those wanting to explore the islands at a relaxed pace will appreciate the full-day Gozitan cruise. For a special celebration or luxurious escape, the private yacht or the all-inclusive catamaran will make your Malta trip truly unforgettable.

No matter which you choose, booking ahead ensures you get the best options and secure your spot in Malta’s gorgeous waters. Enjoy the waves—and maybe even a splash—on your Malta adventure!